Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4660306 | chr1:45978675 | C/T | 4.66E-5 | 490 | 16.97 | 16.07 | 10.6 | KM Plot |
| THCA | rs4660308 | chr1:45993966 | T/C | 8.48E-5 | 488 | 10.8 | 16.3 | 16.92 | KM Plot |
| THCA | rs4660500 | chr1:41524669 | G/A | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs4660860 | chr1:45946233 | T/A | 4.1E-5 | 490 | 10.4 | 16.07 | 16.92 | KM Plot |
| THCA | rs4660862 | chr1:45955056 | C/T | 4.12E-5 | 489 | 10.4 | 16.07 | 16.97 | KM Plot |
| THCA | rs4660864 | chr1:45966582 | C/T | 4.82E-5 | 490 | 10.6 | 16.07 | 16.97 | KM Plot |
| THCA | rs4660866 | chr1:45984108 | T/C | 4.93E-5 | 488 | 10.6 | 16.18 | 16.92 | KM Plot |
| THCA | rs4660867 | chr1:45986484 | A/G | 7.06E-5 | 486 | 10.8 | 16.18 | 16.87 | KM Plot |
| THCA | rs4660868 | chr1:45986497 | A/G | 7.06E-5 | 486 | 10.8 | 16.18 | 16.87 | KM Plot |
| THCA | rs4661200 | chr1:156572914 | A/G | 0 | 490 | 12.6 | 17.77 | 15.87 | KM Plot |
| THCA | rs4664084 | chr2:153022071 | A/G | 2.1E-5 | 490 | 17.22 | 14.45 | 16.35 | KM Plot |
| THCA | rs4672005 | chr2:55246551 | C/T | 0.000151 | 481 | 12.5 | 16.3 | 17.67 | KM Plot |
| THCA | rs4680221 | chr3:155642593 | G/A | 0.000203 | 488 | 9 | 14.63 | 16.47 | KM Plot |
| THCA | rs4683008 | chr3:44945063 | C/T | 0.000163 | 472 | 16.38 | 16.67 | 12.6 | KM Plot |
| THCA | rs4687754 | chr3:53896679 | T/G | 7.33E-15 | 483 | 15.9 | 16.32 | 10.35 | KM Plot |